Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 48 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g T2T -d /beegfs/scratch/ws/ws1/torgunakov-workoct/Juicer-Out/2024-11-13_ENC/Embryo/P184 -s none -p /beegfs/scratch/ws/ws1/torgunakov-workoct/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /beegfs/scratch/ws/ws1/torgunakov-workoct/Databases/T2T-CHM13v2.0/hgT2T.fa -D /home/torgunakov/Tools/juicer1.6_compact -t 48                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
Sequenced Read Pairs:  19,088,601
 Normal Paired: 12,840,865 (67.27%)
 Chimeric Paired: 4,658,007 (24.40%)
 Chimeric Ambiguous: 1,342,942 (7.04%)
 Unmapped: 246,787 (1.29%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 17,498,872 (91.67%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-11-21T15:18:30,664]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 16,300,917 (85.40%)
PCR Duplicates: 1,129,108 (5.92%)
Optical Duplicates: 68,847 (0.36%)
Library Complexity Estimate: 128,658,528
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 2,461,009 (12.89% / 15.10%)
Hi-C Contacts: 13,839,908 (72.50% / 84.90%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 9% - 72% - 9% - 9%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 49%
 Cis/all (FF and RR orient): 55.3%
Inter-chromosomal: 3,171,627  (16.62% / 19.46%)
Intra-chromosomal: 10,668,281  (55.89% / 65.45%)
Short Range (<20,000bp): 7,803,632  (40.88% / 47.87%)
Long Range (>20,000bp): 2,864,649  (15.01% / 17.57%)