Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.13" 2021-10-19; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/juicer -g hg19 -z /Data/DataBases/hg19_Canonic/hg19.fa -p /Data/DataBases/hg19_Canonic/hg19.chrom.sizes -s DpnII -y /Data/DataBases/hg19_Canonic/hg19_DpnII_RS.txt -d /Data/NGS_Data/20220113_Maria_NGS_data_2021_12_27/Results/P47-6                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
Sequenced Read Pairs:  29,142
 Normal Paired: 10,011 (34.35%)
 Chimeric Paired: 10,398 (35.68%)
 Chimeric Ambiguous: 1,654 (5.68%)
 Unmapped: 7,079 (24.29%)
 Ligation Motif Present: 17,434 (59.82%)
Alignable (Normal+Chimeric Paired): 20,409 (70.03%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2022-01-18T14:28:42,416]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 19,340 (66.36%)
PCR Duplicates: 998 (3.42%)
Optical Duplicates: 71 (0.24%)
Library Complexity Estimate: 200,395
Intra-fragment Reads: 1,232 (4.23% / 6.37%)
Below MAPQ Threshold: 1,618 (5.55% / 8.37%)
Hi-C Contacts: 16,490 (56.58% / 85.26%)
 Ligation Motif Present: 14,126  (48.47% / 73.04%)
 3' Bias (Long Range): 79% - 21%
 Pair Type %(L-I-O-R): 24% - 26% - 25% - 24%
Inter-chromosomal: 3,452  (11.85% / 17.85%)
Intra-chromosomal: 13,038  (44.74% / 67.41%)
Short Range (<20Kb): 7,267  (24.94% / 37.57%)
Long Range (>20Kb): 5,771  (19.80% / 29.84%)