Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 16 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/nyt/MMO/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /data/nyt/Projects/Juicer-Out/2023-12-4-Sirius/Embryo/Pol3_K -s DpnII -y /data/nyt/Databases/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -p /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.fa -D /data/nyt/MMO/Tools/juicer1.6_compact -t 16                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  108,248
 Normal Paired: 8,224 (7.60%)
 Chimeric Paired: 833 (0.77%)
 Chimeric Ambiguous: 974 (0.90%)
 Unmapped: 98,217 (90.73%)
 Ligation Motif Present: 847 (0.78%)
Alignable (Normal+Chimeric Paired): 9,057 (8.37%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-12-15T11:33:42,296]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 5,472 (5.06%)
PCR Duplicates: 3,524 (3.26%)
Optical Duplicates: 61 (0.06%)
Library Complexity Estimate: 8,231
Intra-fragment Reads: 2,821 (2.61% / 51.55%)
Below MAPQ Threshold: 1,034 (0.96% / 18.90%)
Hi-C Contacts: 1,617 (1.49% / 29.55%)
 Ligation Motif Present: 27  (0.02% / 0.49%)
 3' Bias (Long Range): 67% - 33%
 Pair Type intra chrom %(L-I-O-R): 0% - 98% - 0% - 1%
 Pair Type inter chrom %(L-I-O-R): 23% - 14% - 28% - 35%
 DE: 92%
 Cis/all (FF and RR orient): 22.1%
Inter-chromosomal: 103  (0.10% / 1.88%)
Intra-chromosomal: 1,514  (1.40% / 27.67%)
Short Range (<20,000bp): 1,493  (1.38% / 27.28%)
Long Range (>20,000bp): 21  (0.02% / 0.38%)