Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 16 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/nyt/MMO/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /data/nyt/Projects/Juicer-Out/2023-12-4-Sirius/Embryo/Sachk1_K -s DpnII -y /data/nyt/Databases/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -p /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.fa -D /data/nyt/MMO/Tools/juicer1.6_compact -t 16                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  97,543
 Normal Paired: 25,617 (26.26%)
 Chimeric Paired: 3,117 (3.20%)
 Chimeric Ambiguous: 5,892 (6.04%)
 Unmapped: 62,917 (64.50%)
 Ligation Motif Present: 2,318 (2.38%)
Alignable (Normal+Chimeric Paired): 28,734 (29.46%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-12-15T11:34:27,056]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 20,328 (20.84%)
PCR Duplicates: 8,091 (8.29%)
Optical Duplicates: 315 (0.32%)
Library Complexity Estimate: 39,902
Intra-fragment Reads: 2,316 (2.37% / 11.39%)
Below MAPQ Threshold: 2,635 (2.70% / 12.96%)
Hi-C Contacts: 15,377 (15.76% / 75.64%)
 Ligation Motif Present: 1,060  (1.09% / 5.21%)
 3' Bias (Long Range): 39% - 61%
 Pair Type intra chrom %(L-I-O-R): 3% - 91% - 3% - 3%
 Pair Type inter chrom %(L-I-O-R): 24% - 23% - 27% - 27%
 DE: 84%
 Cis/all (FF and RR orient): 67.4%
Inter-chromosomal: 816  (0.84% / 4.01%)
Intra-chromosomal: 14,561  (14.93% / 71.63%)
Short Range (<20,000bp): 13,360  (13.70% / 65.72%)
Long Range (>20,000bp): 1,201  (1.23% / 5.91%)