Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 16 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/nyt/MMO/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /data/nyt/Projects/Juicer-Out/2023-12-4-Sirius/Embryo/Sachk2_K -s DpnII -y /data/nyt/Databases/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -p /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.fa -D /data/nyt/MMO/Tools/juicer1.6_compact -t 16                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  92,475
 Normal Paired: 39,869 (43.11%)
 Chimeric Paired: 904 (0.98%)
 Chimeric Ambiguous: 1,431 (1.55%)
 Unmapped: 50,271 (54.36%)
 Ligation Motif Present: 654 (0.71%)
Alignable (Normal+Chimeric Paired): 40,773 (44.09%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-12-15T11:35:11,418]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 30,958 (33.48%)
PCR Duplicates: 9,299 (10.06%)
Optical Duplicates: 516 (0.56%)
Library Complexity Estimate: 73,128
Intra-fragment Reads: 1,791 (1.94% / 5.79%)
Below MAPQ Threshold: 3,345 (3.62% / 10.80%)
Hi-C Contacts: 25,822 (27.92% / 83.41%)
 Ligation Motif Present: 43  (0.05% / 0.14%)
 3' Bias (Long Range): 36% - 64%
 Pair Type intra chrom %(L-I-O-R): 0% - 100% - 0% - 0%
 Pair Type inter chrom %(L-I-O-R): 17% - 23% - 26% - 34%
 DE: 98%
 Cis/all (FF and RR orient): 17.8%
Inter-chromosomal: 343  (0.37% / 1.11%)
Intra-chromosomal: 25,479  (27.55% / 82.30%)
Short Range (<20,000bp): 25,424  (27.49% / 82.12%)
Long Range (>20,000bp): 55  (0.06% / 0.18%)