Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 16 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/nyt/MMO/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /data/nyt/Projects/Juicer-Out/2023-12-4-Sirius/Embryo/Sachk3_K -s DpnII -y /data/nyt/Databases/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -p /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.fa -D /data/nyt/MMO/Tools/juicer1.6_compact -t 16                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  139,835
 Normal Paired: 21,642 (15.48%)
 Chimeric Paired: 1,725 (1.23%)
 Chimeric Ambiguous: 3,613 (2.58%)
 Unmapped: 112,855 (80.71%)
 Ligation Motif Present: 1,352 (0.97%)
Alignable (Normal+Chimeric Paired): 23,367 (16.71%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-12-15T11:35:53,776]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 13,608 (9.73%)
PCR Duplicates: 9,603 (6.87%)
Optical Duplicates: 156 (0.11%)
Library Complexity Estimate: 19,615
Intra-fragment Reads: 5,222 (3.73% / 38.37%)
Below MAPQ Threshold: 2,264 (1.62% / 16.64%)
Hi-C Contacts: 6,122 (4.38% / 44.99%)
 Ligation Motif Present: 143  (0.10% / 1.05%)
 3' Bias (Long Range): 48% - 52%
 Pair Type intra chrom %(L-I-O-R): 1% - 97% - 1% - 1%
 Pair Type inter chrom %(L-I-O-R): 16% - 23% - 29% - 32%
 DE: 91%
 Cis/all (FF and RR orient): 46.7%
Inter-chromosomal: 304  (0.22% / 2.23%)
Intra-chromosomal: 5,818  (4.16% / 42.75%)
Short Range (<20,000bp): 5,674  (4.06% / 41.70%)
Long Range (>20,000bp): 144  (0.10% / 1.06%)