Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 16 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/nyt/MMO/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /data/nyt/Projects/Juicer-Out/2023-12-4-Sirius/Embryo/Sav2_K1 -s DpnII -y /data/nyt/Databases/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -p /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.fa -D /data/nyt/MMO/Tools/juicer1.6_compact -t 16                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  60,720
 Normal Paired: 33,153 (54.60%)
 Chimeric Paired: 1,460 (2.40%)
 Chimeric Ambiguous: 1,034 (1.70%)
 Unmapped: 25,073 (41.29%)
 Ligation Motif Present: 2,118 (3.49%)
Alignable (Normal+Chimeric Paired): 34,613 (57.00%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-12-15T11:36:30,212]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 26,432 (43.53%)
PCR Duplicates: 7,738 (12.74%)
Optical Duplicates: 443 (0.73%)
Library Complexity Estimate: 63,563
Intra-fragment Reads: 1,902 (3.13% / 7.20%)
Below MAPQ Threshold: 2,826 (4.65% / 10.69%)
Hi-C Contacts: 21,704 (35.74% / 82.11%)
 Ligation Motif Present: 1,009  (1.66% / 3.82%)
 3' Bias (Long Range): 38% - 62%
 Pair Type intra chrom %(L-I-O-R): 2% - 95% - 2% - 2%
 Pair Type inter chrom %(L-I-O-R): 19% - 26% - 25% - 30%
 DE: 91%
 Cis/all (FF and RR orient): 78.5%
Inter-chromosomal: 413  (0.68% / 1.56%)
Intra-chromosomal: 21,291  (35.06% / 80.55%)
Short Range (<20,000bp): 20,515  (33.79% / 77.61%)
Long Range (>20,000bp): 776  (1.28% / 2.94%)