Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 16 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/nyt/MMO/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /data/nyt/Projects/Juicer-Out/2023-12-4-Sirius/Embryo/Sav2_K2 -s DpnII -y /data/nyt/Databases/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -p /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.fa -D /data/nyt/MMO/Tools/juicer1.6_compact -t 16 Sequenced Read Pairs: 106,120 Normal Paired: 11,018 (10.38%) Chimeric Paired: 868 (0.82%) Chimeric Ambiguous: 898 (0.85%) Unmapped: 93,336 (87.95%) Ligation Motif Present: 1,062 (1.00%) Alignable (Normal+Chimeric Paired): 11,886 (11.20%) WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance. WARN [2023-12-15T11:37:08,966] [Globals.java:138] [main] Development mode is enabled Unique Reads: 8,476 (7.99%) PCR Duplicates: 3,326 (3.13%) Optical Duplicates: 84 (0.08%) Library Complexity Estimate: 16,785 Intra-fragment Reads: 4,683 (4.41% / 55.25%) Below MAPQ Threshold: 1,296 (1.22% / 15.29%) Hi-C Contacts: 2,497 (2.35% / 29.46%) Ligation Motif Present: 11 (0.01% / 0.13%) 3' Bias (Long Range): 68% - 32% Pair Type intra chrom %(L-I-O-R): 1% - 99% - 0% - 1% Pair Type inter chrom %(L-I-O-R): 22% - 20% - 24% - 34% DE: 91% Cis/all (FF and RR orient): 21.3% Inter-chromosomal: 172 (0.16% / 2.03%) Intra-chromosomal: 2,325 (2.19% / 27.43%) Short Range (<20,000bp): 2,305 (2.17% / 27.19%) Long Range (>20,000bp): 20 (0.02% / 0.24%)