Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 16 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/nyt/MMO/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /data/nyt/Projects/Juicer-Out/2023-12-4-Sirius/Embryo/Sav4_K -s DpnII -y /data/nyt/Databases/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -p /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.fa -D /data/nyt/MMO/Tools/juicer1.6_compact -t 16                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  33,594
 Normal Paired: 19,862 (59.12%)
 Chimeric Paired: 1,962 (5.84%)
 Chimeric Ambiguous: 818 (2.43%)
 Unmapped: 10,952 (32.60%)
 Ligation Motif Present: 2,678 (7.97%)
Alignable (Normal+Chimeric Paired): 21,824 (64.96%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-12-15T11:37:48,107]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 17,140 (51.02%)
PCR Duplicates: 4,431 (13.19%)
Optical Duplicates: 253 (0.75%)
Library Complexity Estimate: 45,038
Intra-fragment Reads: 2,932 (8.73% / 17.11%)
Below MAPQ Threshold: 2,028 (6.04% / 11.83%)
Hi-C Contacts: 12,180 (36.26% / 71.06%)
 Ligation Motif Present: 1,496  (4.45% / 8.73%)
 3' Bias (Long Range): 46% - 54%
 Pair Type intra chrom %(L-I-O-R): 4% - 88% - 4% - 4%
 Pair Type inter chrom %(L-I-O-R): 26% - 26% - 19% - 28%
 DE: 81%
 Cis/all (FF and RR orient): 79.1%
Inter-chromosomal: 442  (1.32% / 2.58%)
Intra-chromosomal: 11,738  (34.94% / 68.48%)
Short Range (<20,000bp): 10,458  (31.13% / 61.02%)
Long Range (>20,000bp): 1,280  (3.81% / 7.47%)