Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 16 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/nyt/MMO/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /data/nyt/Projects/Juicer-Out/2023-12-4-Sirius/Embryo/Shur1_K -s DpnII -y /data/nyt/Databases/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -p /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.fa -D /data/nyt/MMO/Tools/juicer1.6_compact -t 16                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  82,805
 Normal Paired: 2,402 (2.90%)
 Chimeric Paired: 514 (0.62%)
 Chimeric Ambiguous: 423 (0.51%)
 Unmapped: 79,466 (95.97%)
 Ligation Motif Present: 8,587 (10.37%)
Alignable (Normal+Chimeric Paired): 2,916 (3.52%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-12-15T11:38:24,452]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 953 (1.15%)
PCR Duplicates: 1,949 (2.35%)
Optical Duplicates: 14 (0.02%)
Library Complexity Estimate: 1,010
Intra-fragment Reads: 387 (0.47% / 40.61%)
Below MAPQ Threshold: 290 (0.35% / 30.43%)
Hi-C Contacts: 276 (0.33% / 28.96%)
 Ligation Motif Present: 32  (0.04% / 3.36%)
 3' Bias (Long Range): 66% - 34%
 Pair Type intra chrom %(L-I-O-R): 4% - 87% - 5% - 4%
 Pair Type inter chrom %(L-I-O-R): 31% - 20% - 20% - 29%
 DE: 69%
 Cis/all (FF and RR orient): 38.3%
Inter-chromosomal: 49  (0.06% / 5.14%)
Intra-chromosomal: 227  (0.27% / 23.82%)
Short Range (<20,000bp): 221  (0.27% / 23.19%)
Long Range (>20,000bp): 6  (0.01% / 0.63%)