Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/nyt/MMO/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /data/nyt/Projects/Juicer-Out/2023-11-20-BGI/Embryo/Shur1_e -s DpnII -y /data/nyt/MMO/Databases/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -p /data/nyt/MMO/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /data/nyt/MMO/Databases/T2T-CHM13v2.0/hgT2T.fa -D /data/nyt/MMO/Tools/juicer1.6_compact -t 20                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
Sequenced Read Pairs:  39
 Normal Paired: 16 (41.03%)
 Chimeric Paired: 16 (41.03%)
 Chimeric Ambiguous: 2 (5.13%)
 Unmapped: 5 (12.82%)
 Ligation Motif Present: 11 (28.21%)
Alignable (Normal+Chimeric Paired): 32 (82.05%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-11-22T16:32:44,497]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 32 (82.05%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 0
Intra-fragment Reads: 8 (20.51% / 25.00%)
Below MAPQ Threshold: 3 (7.69% / 9.38%)
Hi-C Contacts: 21 (53.85% / 65.62%)
 Ligation Motif Present: 9  (23.08% / 28.12%)
 3' Bias (Long Range): 64% - 36%
 Pair Type intra chrom %(L-I-O-R): 20% - 40% - 20% - 20%
 Pair Type inter chrom %(L-I-O-R): 17% - 33% - 33% - 17%
 DE: 14%
 Cis/all (FF and RR orient): 75.0%
Inter-chromosomal: 6  (15.38% / 18.75%)
Intra-chromosomal: 15  (38.46% / 46.88%)
Short Range (<20,000bp): 10  (25.64% / 31.25%)
Long Range (>20,000bp): 5  (12.82% / 15.62%)