Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 14 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/amivanov/Tools/juicer1.6_compact-main/scripts/juicer.sh -g T2T -d /data/amivanov/Projects/Embryos/2025-04-24-BGI/B/Shur1_e -s DpnII -y /data/amivanov/Databases/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -p /data/amivanov/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /data/amivanov/Databases/T2T-CHM13v2.0/hgT2T.fa -D /data/amivanov/Tools/juicer1.6_compact-main -t 14                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
Sequenced Read Pairs:  1,131
 Normal Paired: 83 (7.34%)
 Chimeric Paired: 63 (5.57%)
 Chimeric Ambiguous: 14 (1.24%)
 Unmapped: 971 (85.85%)
 Ligation Motif Present: 99 (8.75%)
Alignable (Normal+Chimeric Paired): 146 (12.91%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-05-17T17:19:00,277]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 139 (12.29%)
PCR Duplicates: 7 (0.62%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 1,473
Intra-fragment Reads: 15 (1.33% / 10.79%)
Below MAPQ Threshold: 30 (2.65% / 21.58%)
Hi-C Contacts: 109 (9.64% / 78.42%)
 Ligation Motif Present: 58  (5.13% / 41.73%)
 3' Bias (Long Range): 65% - 35%
 Pair Type intra chrom %(L-I-O-R): 7% - 62% - 18% - 13%
 Pair Type inter chrom %(L-I-O-R): 18% - 41% - 12% - 29%
 DE: 51%
 Cis/all (FF and RR orient): 69.2%
Inter-chromosomal: 17  (1.50% / 12.23%)
Intra-chromosomal: 92  (8.13% / 66.19%)
Short Range (<20,000bp): 61  (5.39% / 43.88%)
Long Range (>20,000bp): 31  (2.74% / 22.30%)