Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 8 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g T2T -d /beegfs/scratch/ws/ws1/torgunakov-workoct/Juicer-Out/2024-11-20-MyGenetics/Embryo/Shur3_K -s DpnII -y /beegfs/scratch/ws/ws1/torgunakov-workoct/Databases/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -p /beegfs/scratch/ws/ws1/torgunakov-workoct/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /beegfs/scratch/ws/ws1/torgunakov-workoct/Databases/T2T-CHM13v2.0/hgT2T.fa -D /home/torgunakov/Tools/juicer1.6_compact -t 8                                                                                                                                                                                                                                                                                                                                                                                                        
Sequenced Read Pairs:  58,319
 Normal Paired: 30,925 (53.03%)
 Chimeric Paired: 19,445 (33.34%)
 Chimeric Ambiguous: 5,196 (8.91%)
 Unmapped: 2,753 (4.72%)
 Ligation Motif Present: 36,219 (62.10%)
Alignable (Normal+Chimeric Paired): 50,370 (86.37%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-11-25T12:41:29,897]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 50,160 (86.01%)
PCR Duplicates: 171 (0.29%)
Optical Duplicates: 39 (0.07%)
Library Complexity Estimate: 7,390,258
Intra-fragment Reads: 3,962 (6.79% / 7.90%)
Below MAPQ Threshold: 4,719 (8.09% / 9.41%)
Hi-C Contacts: 45,441 (77.92% / 90.59%)
 Ligation Motif Present: 27,868  (47.79% / 55.56%)
 3' Bias (Long Range): 68% - 32%
 Pair Type intra chrom %(L-I-O-R): 14% - 59% - 14% - 14%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 26% - 25%
 DE: 41%
 Cis/all (FF and RR orient): 84.2%
Inter-chromosomal: 4,292  (7.36% / 8.56%)
Intra-chromosomal: 41,149  (70.56% / 82.04%)
Short Range (<20,000bp): 25,456  (43.65% / 50.75%)
Long Range (>20,000bp): 15,693  (26.91% / 31.29%)