Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/nyt/MMO/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /data/nyt/Projects/Juicer-Out/2023-11-20-BGI/Embryo/Ton1_K -s DpnII -y /data/nyt/MMO/Databases/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -p /data/nyt/MMO/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /data/nyt/MMO/Databases/T2T-CHM13v2.0/hgT2T.fa -D /data/nyt/MMO/Tools/juicer1.6_compact -t 20                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  5,299,721
 Normal Paired: 1,121,172 (21.16%)
 Chimeric Paired: 637,579 (12.03%)
 Chimeric Ambiguous: 81,638 (1.54%)
 Unmapped: 3,459,332 (65.27%)
 Ligation Motif Present: 1,391,508 (26.26%)
Alignable (Normal+Chimeric Paired): 1,758,751 (33.19%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-11-22T16:36:53,446]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 101,313 (1.91%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 1,657,438 (31.27%)
Library Complexity Estimate: 0
Intra-fragment Reads: 16,591 (0.31% / 16.38%)
Below MAPQ Threshold: 40,396 (0.76% / 39.87%)
Hi-C Contacts: 44,326 (0.84% / 43.75%)
 Ligation Motif Present: 20,212  (0.38% / 19.95%)
 3' Bias (Long Range): 73% - 27%
 Pair Type intra chrom %(L-I-O-R): 12% - 64% - 12% - 12%
 Pair Type inter chrom %(L-I-O-R): 25% - 24% - 25% - 25%
 DE: 45%
 Cis/all (FF and RR orient): 75.1%
Inter-chromosomal: 5,988  (0.11% / 5.91%)
Intra-chromosomal: 38,338  (0.72% / 37.84%)
Short Range (<20,000bp): 25,041  (0.47% / 24.72%)
Long Range (>20,000bp): 13,297  (0.25% / 13.12%)