Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 16 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/nyt/MMO/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /data/nyt/Projects/Juicer-Out/2023-12-4-Sirius/Embryo/XAH_e13 -s DpnII -y /data/nyt/Databases/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -p /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.fa -D /data/nyt/MMO/Tools/juicer1.6_compact -t 16                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  18,765,510
 Normal Paired: 9,161,469 (48.82%)
 Chimeric Paired: 7,058,957 (37.62%)
 Chimeric Ambiguous: 2,176,998 (11.60%)
 Unmapped: 368,086 (1.96%)
 Ligation Motif Present: 14,052,947 (74.89%)
Alignable (Normal+Chimeric Paired): 16,220,426 (86.44%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-12-15T12:25:18,236]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 7,684,773 (40.95%)
PCR Duplicates: 8,379,068 (44.65%)
Optical Duplicates: 156,585 (0.83%)
Library Complexity Estimate: 9,374,032
Intra-fragment Reads: 367,730 (1.96% / 4.79%)
Below MAPQ Threshold: 1,335,279 (7.12% / 17.38%)
Hi-C Contacts: 5,981,764 (31.88% / 77.84%)
 Ligation Motif Present: 4,514,272  (24.06% / 58.74%)
 3' Bias (Long Range): 72% - 28%
 Pair Type intra chrom %(L-I-O-R): 17% - 50% - 16% - 17%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 30%
 Cis/all (FF and RR orient): 85.3%
Inter-chromosomal: 615,478  (3.28% / 8.01%)
Intra-chromosomal: 5,366,286  (28.60% / 69.83%)
Short Range (<20,000bp): 2,866,462  (15.28% / 37.30%)
Long Range (>20,000bp): 2,499,824  (13.32% / 32.53%)