Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/nyt/MMO/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /data/nyt/Projects/Juicer-Out/2023-11-20-BGI/Embryo/Zap_K2 -s DpnII -y /data/nyt/MMO/Databases/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -p /data/nyt/MMO/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /data/nyt/MMO/Databases/T2T-CHM13v2.0/hgT2T.fa -D /data/nyt/MMO/Tools/juicer1.6_compact -t 20                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  670,502
 Normal Paired: 320,218 (47.76%)
 Chimeric Paired: 261,336 (38.98%)
 Chimeric Ambiguous: 59,597 (8.89%)
 Unmapped: 29,351 (4.38%)
 Ligation Motif Present: 450,571 (67.20%)
Alignable (Normal+Chimeric Paired): 581,554 (86.73%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-11-22T16:42:17,165]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 504,478 (75.24%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 77,076 (11.50%)
Library Complexity Estimate: 0
Intra-fragment Reads: 38,638 (5.76% / 7.66%)
Below MAPQ Threshold: 51,348 (7.66% / 10.18%)
Hi-C Contacts: 414,492 (61.82% / 82.16%)
 Ligation Motif Present: 299,811  (44.71% / 59.43%)
 3' Bias (Long Range): 74% - 26%
 Pair Type intra chrom %(L-I-O-R): 15% - 56% - 15% - 15%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 31%
 Cis/all (FF and RR orient): 66.3%
Inter-chromosomal: 96,074  (14.33% / 19.04%)
Intra-chromosomal: 318,418  (47.49% / 63.12%)
Short Range (<20,000bp): 174,609  (26.04% / 34.61%)
Long Range (>20,000bp): 143,809  (21.45% / 28.51%)