Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/nyt/MMO/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /data/nyt/Projects/Juicer-Out/2023-11-20-BGI/Embryo/Zap_e2 -s DpnII -y /data/nyt/MMO/Databases/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -p /data/nyt/MMO/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /data/nyt/MMO/Databases/T2T-CHM13v2.0/hgT2T.fa -D /data/nyt/MMO/Tools/juicer1.6_compact -t 20                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  487,460
 Normal Paired: 220,652 (45.27%)
 Chimeric Paired: 213,617 (43.82%)
 Chimeric Ambiguous: 48,611 (9.97%)
 Unmapped: 4,580 (0.94%)
 Ligation Motif Present: 381,017 (78.16%)
Alignable (Normal+Chimeric Paired): 434,269 (89.09%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-11-22T16:38:36,469]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 318,915 (65.42%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 115,354 (23.66%)
Library Complexity Estimate: 0
Intra-fragment Reads: 14,528 (2.98% / 4.56%)
Below MAPQ Threshold: 37,610 (7.72% / 11.79%)
Hi-C Contacts: 266,777 (54.73% / 83.65%)
 Ligation Motif Present: 210,726  (43.23% / 66.08%)
 3' Bias (Long Range): 75% - 25%
 Pair Type intra chrom %(L-I-O-R): 15% - 56% - 15% - 15%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 30%
 Cis/all (FF and RR orient): 62.4%
Inter-chromosomal: 70,147  (14.39% / 22.00%)
Intra-chromosomal: 196,630  (40.34% / 61.66%)
Short Range (<20,000bp): 117,658  (24.14% / 36.89%)
Long Range (>20,000bp): 78,972  (16.20% / 24.76%)