Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/nyt/MMO/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /data/nyt/Projects/Juicer-Out/2023-11-20-BGI/Embryo/Zap_e3 -s DpnII -y /data/nyt/MMO/Databases/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -p /data/nyt/MMO/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /data/nyt/MMO/Databases/T2T-CHM13v2.0/hgT2T.fa -D /data/nyt/MMO/Tools/juicer1.6_compact -t 20                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  375,462
 Normal Paired: 186,577 (49.69%)
 Chimeric Paired: 155,853 (41.51%)
 Chimeric Ambiguous: 30,359 (8.09%)
 Unmapped: 2,673 (0.71%)
 Ligation Motif Present: 276,388 (73.61%)
Alignable (Normal+Chimeric Paired): 342,430 (91.20%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-11-22T16:40:10,689]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 322,138 (85.80%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 20,292 (5.40%)
Library Complexity Estimate: 0
Intra-fragment Reads: 18,983 (5.06% / 5.89%)
Below MAPQ Threshold: 30,047 (8.00% / 9.33%)
Hi-C Contacts: 273,108 (72.74% / 84.78%)
 Ligation Motif Present: 207,682  (55.31% / 64.47%)
 3' Bias (Long Range): 75% - 25%
 Pair Type intra chrom %(L-I-O-R): 15% - 55% - 15% - 15%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 35%
 Cis/all (FF and RR orient): 81.9%
Inter-chromosomal: 31,965  (8.51% / 9.92%)
Intra-chromosomal: 241,143  (64.23% / 74.86%)
Short Range (<20,000bp): 143,552  (38.23% / 44.56%)
Long Range (>20,000bp): 97,591  (25.99% / 30.29%)