Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.18" 2023-01-17; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /storage2/nyt/Projects/Juicer-Out/2023-03-14_Moscow/Embryos/c1 -s DpnII -y /storage2/nyt/Data/Genomes/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -p /storage2/nyt/Data/Genomes/T2T-CHM13v2.0/hgT2T.chromsizes -z /storage2/nyt/Data/Genomes/T2T-CHM13v2.0/hgT2T.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
Sequenced Read Pairs:  1,173,831
 Normal Paired: 792,802 (67.54%)
 Chimeric Paired: 48,982 (4.17%)
 Chimeric Ambiguous: 13,737 (1.17%)
 Unmapped: 318,310 (27.12%)
 Ligation Motif Present: 72,697 (6.19%)
Alignable (Normal+Chimeric Paired): 841,784 (71.71%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-03-19T22:35:48,014]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 125,859 (10.72%)
PCR Duplicates: 715,889 (60.99%)
Optical Duplicates: 36 (0.00%)
Library Complexity Estimate: 126,017
Intra-fragment Reads: 25,372 (2.16% / 20.16%)
Below MAPQ Threshold: 38,083 (3.24% / 30.26%)
Hi-C Contacts: 62,404 (5.32% / 49.58%)
 Ligation Motif Present: 6,154  (0.52% / 4.89%)
 3' Bias (Long Range): 46% - 54%
 Pair Type intra chrom %(L-I-O-R): 4% - 89% - 4% - 4%
 Pair Type inter chrom %(L-I-O-R): 24% - 25% - 25% - 26%
 DE: 78%
 Cis/all (FF and RR orient): 63.6%
Inter-chromosomal: 5,031  (0.43% / 4.00%)
Intra-chromosomal: 57,373  (4.89% / 45.59%)
Short Range (<20,000bp): 50,626  (4.31% / 40.22%)
Long Range (>20,000bp): 6,747  (0.57% / 5.36%)