Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.18" 2023-01-17; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /storage2/nyt/Projects/Juicer-Out/2023-03-14_Moscow/Embryos/c2 -s DpnII -y /storage2/nyt/Data/Genomes/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -p /storage2/nyt/Data/Genomes/T2T-CHM13v2.0/hgT2T.chromsizes -z /storage2/nyt/Data/Genomes/T2T-CHM13v2.0/hgT2T.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
Sequenced Read Pairs:  1,219,629
 Normal Paired: 756,254 (62.01%)
 Chimeric Paired: 13,076 (1.07%)
 Chimeric Ambiguous: 5,710 (0.47%)
 Unmapped: 444,589 (36.45%)
 Ligation Motif Present: 17,382 (1.43%)
Alignable (Normal+Chimeric Paired): 769,330 (63.08%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-03-19T22:45:55,685]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 108,874 (8.93%)
PCR Duplicates: 660,436 (54.15%)
Optical Duplicates: 20 (0.00%)
Library Complexity Estimate: 108,967
Intra-fragment Reads: 10,690 (0.88% / 9.82%)
Below MAPQ Threshold: 30,417 (2.49% / 27.94%)
Hi-C Contacts: 67,767 (5.56% / 62.24%)
 Ligation Motif Present: 1,458  (0.12% / 1.34%)
 3' Bias (Long Range): 38% - 62%
 Pair Type intra chrom %(L-I-O-R): 1% - 97% - 1% - 1%
 Pair Type inter chrom %(L-I-O-R): 22% - 25% - 28% - 25%
 DE: 93%
 Cis/all (FF and RR orient): 47.3%
Inter-chromosomal: 2,722  (0.22% / 2.50%)
Intra-chromosomal: 65,045  (5.33% / 59.74%)
Short Range (<20,000bp): 63,306  (5.19% / 58.15%)
Long Range (>20,000bp): 1,739  (0.14% / 1.60%)