Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.18" 2023-01-17; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /storage2/nyt/Projects/Juicer-Out/2023-03-14_Moscow/Embryos/c3 -s DpnII -y /storage2/nyt/Data/Genomes/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -p /storage2/nyt/Data/Genomes/T2T-CHM13v2.0/hgT2T.chromsizes -z /storage2/nyt/Data/Genomes/T2T-CHM13v2.0/hgT2T.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
Sequenced Read Pairs:  1,343,216
 Normal Paired: 613,111 (45.65%)
 Chimeric Paired: 274,517 (20.44%)
 Chimeric Ambiguous: 72,367 (5.39%)
 Unmapped: 383,221 (28.53%)
 Ligation Motif Present: 537,139 (39.99%)
Alignable (Normal+Chimeric Paired): 887,628 (66.08%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-03-19T22:52:32,794]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 715,073 (53.24%)
PCR Duplicates: 172,469 (12.84%)
Optical Duplicates: 86 (0.01%)
Library Complexity Estimate: 1,977,115
Intra-fragment Reads: 81,913 (6.10% / 11.46%)
Below MAPQ Threshold: 71,326 (5.31% / 9.97%)
Hi-C Contacts: 561,834 (41.83% / 78.57%)
 Ligation Motif Present: 311,370  (23.18% / 43.54%)
 3' Bias (Long Range): 64% - 36%
 Pair Type intra chrom %(L-I-O-R): 14% - 58% - 14% - 14%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 38%
 Cis/all (FF and RR orient): 80.9%
Inter-chromosomal: 66,077  (4.92% / 9.24%)
Intra-chromosomal: 495,757  (36.91% / 69.33%)
Short Range (<20,000bp): 307,805  (22.92% / 43.05%)
Long Range (>20,000bp): 187,952  (13.99% / 26.28%)