Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.18" 2023-01-17; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /storage2/nyt/Projects/Juicer-Out/2023-03-14_Moscow/Embryos/c4 -s DpnII -y /storage2/nyt/Data/Genomes/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -p /storage2/nyt/Data/Genomes/T2T-CHM13v2.0/hgT2T.chromsizes -z /storage2/nyt/Data/Genomes/T2T-CHM13v2.0/hgT2T.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
Sequenced Read Pairs:  1,468,882
 Normal Paired: 746,504 (50.82%)
 Chimeric Paired: 334,000 (22.74%)
 Chimeric Ambiguous: 80,691 (5.49%)
 Unmapped: 307,687 (20.95%)
 Ligation Motif Present: 632,004 (43.03%)
Alignable (Normal+Chimeric Paired): 1,080,504 (73.56%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-03-19T22:59:09,018]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 935,952 (63.72%)
PCR Duplicates: 144,446 (9.83%)
Optical Duplicates: 106 (0.01%)
Library Complexity Estimate: 3,671,685
Intra-fragment Reads: 102,005 (6.94% / 10.90%)
Below MAPQ Threshold: 86,290 (5.87% / 9.22%)
Hi-C Contacts: 747,657 (50.90% / 79.88%)
 Ligation Motif Present: 414,844  (28.24% / 44.32%)
 3' Bias (Long Range): 64% - 36%
 Pair Type intra chrom %(L-I-O-R): 14% - 59% - 14% - 14%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 39%
 Cis/all (FF and RR orient): 80.4%
Inter-chromosomal: 88,509  (6.03% / 9.46%)
Intra-chromosomal: 659,148  (44.87% / 70.43%)
Short Range (<20,000bp): 425,108  (28.94% / 45.42%)
Long Range (>20,000bp): 234,040  (15.93% / 25.01%)