Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.13" 2021-10-19; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/juicer -g hg19 -z /Data/DataBases/hg19_Canonic/hg19.fa -p /Data/DataBases/hg19_Canonic/hg19.chrom.sizes -s DpnII -y /Data/DataBases/hg19_Canonic/hg19_DpnII_RS.txt -d /Data/NGS_Data/20220113_Maria_NGS_data_2021_12_27/Results/e1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
Sequenced Read Pairs:  25,432
 Normal Paired: 10,995 (43.23%)
 Chimeric Paired: 10,633 (41.81%)
 Chimeric Ambiguous: 1,757 (6.91%)
 Unmapped: 2,047 (8.05%)
 Ligation Motif Present: 17,843 (70.16%)
Alignable (Normal+Chimeric Paired): 21,628 (85.04%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2022-01-18T14:20:55,559]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 21,078 (82.88%)
PCR Duplicates: 492 (1.93%)
Optical Duplicates: 58 (0.23%)
Library Complexity Estimate: 465,612
Intra-fragment Reads: 1,934 (7.60% / 9.18%)
Below MAPQ Threshold: 3,328 (13.09% / 15.79%)
Hi-C Contacts: 15,816 (62.19% / 75.04%)
 Ligation Motif Present: 13,108  (51.54% / 62.19%)
 3' Bias (Long Range): 76% - 24%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 1,331  (5.23% / 6.31%)
Intra-chromosomal: 14,485  (56.96% / 68.72%)
Short Range (<20Kb): 8,216  (32.31% / 38.98%)
Long Range (>20Kb): 6,269  (24.65% / 29.74%)