Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.17" 2022-10-18; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /storage2/nyt/Projects/Juicer-Out/2022-11-07_BGI_Moscow/Embryos_Yana/embryo6 -s DpnII -y /storage2/dreamworld/Databases/hg19_canonical/juicer.rs/hg19_canonical.rs.DpnII.txt -p /storage2/dreamworld/Databases/hg19_canonical/hg19_canonical.chrom.sizes -z /storage2/dreamworld/Databases/hg19_canonical/hg19_canonical.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10                                                                                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  1,832,307
 Normal Paired: 1,138,378 (62.13%)
 Chimeric Paired: 456,221 (24.90%)
 Chimeric Ambiguous: 101,516 (5.54%)
 Unmapped: 136,192 (7.43%)
 Ligation Motif Present: 1,257,225 (68.61%)
Alignable (Normal+Chimeric Paired): 1,594,599 (87.03%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2022-11-18T11:48:18,103]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 1,372,473 (74.90%)
PCR Duplicates: 222,126 (12.12%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 5,178,771
Intra-fragment Reads: 370,728 (20.23% / 27.01%)
Below MAPQ Threshold: 156,412 (8.54% / 11.40%)
Hi-C Contacts: 845,333 (46.13% / 61.59%)
 Ligation Motif Present: 622,552  (33.98% / 45.36%)
 3' Bias (Long Range): 71% - 29%
 Pair Type intra chrom %(L-I-O-R): 17% - 49% - 17% - 17%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 27%
 Cis/all (FF and RR orient): 80.0%
Inter-chromosomal: 124,162  (6.78% / 9.05%)
Intra-chromosomal: 721,171  (39.36% / 52.55%)
Short Range (<20,000bp): 320,775  (17.51% / 23.37%)
Long Range (>20,000bp): 400,396  (21.85% / 29.17%)