Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.17" 2022-10-18; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /storage2/nyt/Projects/Juicer-Out/2022-11-07_BGI_Moscow/Embryos_Yana/embyo5 -s DpnII -y /storage2/dreamworld/Databases/hg19_canonical/juicer.rs/hg19_canonical.rs.DpnII.txt -p /storage2/dreamworld/Databases/hg19_canonical/hg19_canonical.chrom.sizes -z /storage2/dreamworld/Databases/hg19_canonical/hg19_canonical.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10                                                                                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  1,813,114
 Normal Paired: 71,093 (3.92%)
 Chimeric Paired: 20,587 (1.14%)
 Chimeric Ambiguous: 2,426 (0.13%)
 Unmapped: 1,719,008 (94.81%)
 Ligation Motif Present: 20,865 (1.15%)
Alignable (Normal+Chimeric Paired): 91,680 (5.06%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2022-11-18T11:52:02,515]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 32,223 (1.78%)
PCR Duplicates: 59,457 (3.28%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 34,692
Intra-fragment Reads: 22,125 (1.22% / 68.66%)
Below MAPQ Threshold: 5,134 (0.28% / 15.93%)
Hi-C Contacts: 4,964 (0.27% / 15.41%)
 Ligation Motif Present: 192  (0.01% / 0.60%)
 3' Bias (Long Range): 74% - 26%
 Pair Type intra chrom %(L-I-O-R): 6% - 83% - 5% - 6%
 Pair Type inter chrom %(L-I-O-R): 25% - 27% - 24% - 24%
 DE: 61%
 Cis/all (FF and RR orient): 51.7%
Inter-chromosomal: 938  (0.05% / 2.91%)
Intra-chromosomal: 4,026  (0.22% / 12.49%)
Short Range (<20,000bp): 3,761  (0.21% / 11.67%)
Long Range (>20,000bp): 265  (0.01% / 0.82%)