Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.17" 2022-10-18; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /storage2/nyt/Projects/Juicer-Out/2022-11-07_BGI_Moscow/Embryos_Yana/microchip-c -s DpnII -y /storage2/dreamworld/Databases/hg19_canonical/juicer.rs/hg19_canonical.rs.DpnII.txt -p /storage2/dreamworld/Databases/hg19_canonical/hg19_canonical.chrom.sizes -z /storage2/dreamworld/Databases/hg19_canonical/hg19_canonical.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10                                                                                                                                                                                                                                                                                                                                                                                                                                                         
Sequenced Read Pairs:  321,711
 Normal Paired: 182,934 (56.86%)
 Chimeric Paired: 63,909 (19.87%)
 Chimeric Ambiguous: 15,960 (4.96%)
 Unmapped: 58,908 (18.31%)
 Ligation Motif Present: 157,422 (48.93%)
Alignable (Normal+Chimeric Paired): 246,843 (76.73%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2022-11-18T12:22:29,219]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 242,506 (75.38%)
PCR Duplicates: 4,337 (1.35%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 6,942,085
Intra-fragment Reads: 93,393 (29.03% / 38.51%)
Below MAPQ Threshold: 24,892 (7.74% / 10.26%)
Hi-C Contacts: 124,221 (38.61% / 51.22%)
 Ligation Motif Present: 86,741  (26.96% / 35.77%)
 3' Bias (Long Range): 71% - 29%
 Pair Type intra chrom %(L-I-O-R): 16% - 52% - 16% - 16%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 29%
 Cis/all (FF and RR orient): 70.2%
Inter-chromosomal: 26,329  (8.18% / 10.86%)
Intra-chromosomal: 97,892  (30.43% / 40.37%)
Short Range (<20,000bp): 48,757  (15.16% / 20.11%)
Long Range (>20,000bp): 49,135  (15.27% / 20.26%)