Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.17" 2022-10-18; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /storage2/nyt/Projects/Juicer-Out/2022-11-07_BGI_Moscow/Embryos_Yana/microchip-c -s DpnII -y /storage2/dreamworld/Databases/hg19_canonical/juicer.rs/hg19_canonical.rs.DpnII.txt -p /storage2/dreamworld/Databases/hg19_canonical/hg19_canonical.chrom.sizes -z /storage2/dreamworld/Databases/hg19_canonical/hg19_canonical.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10 Sequenced Read Pairs: 321,711 Normal Paired: 182,934 (56.86%) Chimeric Paired: 63,909 (19.87%) Chimeric Ambiguous: 15,960 (4.96%) Unmapped: 58,908 (18.31%) Ligation Motif Present: 157,422 (48.93%) Alignable (Normal+Chimeric Paired): 246,843 (76.73%) WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance. WARN [2022-11-18T12:22:29,219] [Globals.java:138] [main] Development mode is enabled Unique Reads: 242,506 (75.38%) PCR Duplicates: 4,337 (1.35%) Optical Duplicates: 0 (0.00%) Library Complexity Estimate: 6,942,085 Intra-fragment Reads: 93,393 (29.03% / 38.51%) Below MAPQ Threshold: 24,892 (7.74% / 10.26%) Hi-C Contacts: 124,221 (38.61% / 51.22%) Ligation Motif Present: 86,741 (26.96% / 35.77%) 3' Bias (Long Range): 71% - 29% Pair Type intra chrom %(L-I-O-R): 16% - 52% - 16% - 16% Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25% DE: 29% Cis/all (FF and RR orient): 70.2% Inter-chromosomal: 26,329 (8.18% / 10.86%) Intra-chromosomal: 97,892 (30.43% / 40.37%) Short Range (<20,000bp): 48,757 (15.16% / 20.11%) Long Range (>20,000bp): 49,135 (15.27% / 20.26%)