Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -d /mnt/storage/home/manuriddinov/scratch/fastq/O/O20 -b GATC -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/galGal5/galGal5.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/galGal5/galGal5.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/galGal5/galGal5.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/O/O20 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                               
Sequenced Read Pairs:  6,428,645
 Normal Paired: 2,344,588 (36.47%)
 Chimeric Paired: 409,382 (6.37%)
 Chimeric Ambiguous: 118,246 (1.84%)
 Unmapped: 3,556,429 (55.32%)
 Ligation Motif Present: 2,621,733 (40.78%)
Alignable (Normal+Chimeric Paired): 2,753,970 (42.84%)
Unique Reads: 1,641,779 (25.54%)
PCR Duplicates: 1,112,191 (17.30%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 2,411,404
Intra-fragment Reads: 1,027,784 (15.99% / 62.60%)
Below MAPQ Threshold: 37,013 (0.58% / 2.25%)
Hi-C Contacts: 576,982 (8.98% / 35.14%)
 Ligation Motif Present: 492,051  (7.65% / 29.97%)
 3' Bias (Long Range): 75% - 25%
 Pair Type %(L-I-O-R): 28% - 22% - 24% - 26%
Inter-chromosomal: 2,309  (0.04% / 0.14%)
Intra-chromosomal: 574,673  (8.94% / 35.00%)
Short Range (<20Kb): 508,506  (7.91% / 30.97%)
Long Range (>20Kb): 66,167  (1.03% / 4.03%)