Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -d /mnt/storage/home/manuriddinov/scratch/fastq/O/O27 -b GATC -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/galGal5/galGal5.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/galGal5/galGal5.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/galGal5/galGal5.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/O/O27 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                               
Sequenced Read Pairs:  6,792,296
 Normal Paired: 4,552,586 (67.03%)
 Chimeric Paired: 372,329 (5.48%)
 Chimeric Ambiguous: 97,746 (1.44%)
 Unmapped: 1,769,635 (26.05%)
 Ligation Motif Present: 2,990,748 (44.03%)
Alignable (Normal+Chimeric Paired): 4,924,915 (72.51%)
Unique Reads: 3,307,362 (48.69%)
PCR Duplicates: 1,617,553 (23.81%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 5,745,551
Intra-fragment Reads: 1,868,109 (27.50% / 56.48%)
Below MAPQ Threshold: 30,822 (0.45% / 0.93%)
Hi-C Contacts: 1,408,431 (20.74% / 42.58%)
 Ligation Motif Present: 1,249,398  (18.39% / 37.78%)
 3' Bias (Long Range): 72% - 28%
 Pair Type %(L-I-O-R): 27% - 21% - 27% - 25%
Inter-chromosomal: 6,159  (0.09% / 0.19%)
Intra-chromosomal: 1,402,272  (20.65% / 42.40%)
Short Range (<20Kb): 1,342,555  (19.77% / 40.59%)
Long Range (>20Kb): 59,717  (0.88% / 1.81%)