Experiment description: O129
Sequenced Read Pairs:  5,477,056
 Normal Paired: 990,486 (18.08%)
 Chimeric Paired: 609,106 (11.12%)
 Chimeric Ambiguous: 312,521 (5.71%)
 Unmapped: 3,564,943 (65.09%)
 Ligation Motif Present: 1,957,829 (35.75%)
Alignable (Normal+Chimeric Paired): 1,599,592 (29.21%)
Unique Reads: 566,946 (10.35%)
PCR Duplicates: 385,765 (7.04%)
Optical Duplicates: 646,881 (11.81%)
Library Complexity Estimate: 831,010
Intra-fragment Reads: 45,452 (0.83% / 8.02%)
Below MAPQ Threshold: 40,512 (0.74% / 7.15%)
Hi-C Contacts: 480,982 (8.78% / 84.84%)
 Ligation Motif Present: 279,261  (5.10% / 49.26%)
 3' Bias (Long Range): 76% - 24%
 Pair Type intra chrom %(L-I-O-R): 15% - 57% - 14% - 15%
 Pair Type inter chrom %(L-I-O-R): 26% - 25% - 24% - 26%
 DE: 41%
 Cis/all (FF and RR orient): 99.8%
Inter-chromosomal: 470  (0.01% / 0.08%)
Intra-chromosomal: 480,512  (8.77% / 84.75%)
Short Range (<20,000bp): 324,081  (5.92% / 57.16%)
Long Range (>20,000bp): 156,431  (2.86% / 27.59%)