Sequenced Read Pairs: 1,118,669 Normal Paired: 283,173 (25.31%) Chimeric Paired: 174,021 (15.56%) Chimeric Ambiguous: 80,221 (7.17%) Unmapped: 581,254 (51.96%) Ligation Motif Present: 445,672 (39.84%) Alignable (Normal+Chimeric Paired): 457,194 (40.87%) Unique Reads: 241,018 (21.55%) PCR Duplicates: 213,501 (19.09%) Optical Duplicates: 2,675 (0.24%) Library Complexity Estimate: 316,025 Intra-fragment Reads: 14,630 (1.31% / 6.07%) Below MAPQ Threshold: 13,087 (1.17% / 5.43%) Hi-C Contacts: 213,301 (19.07% / 88.50%) Ligation Motif Present: 91,324 (8.16% / 37.89%) 3' Bias (Long Range): 74% - 26% Pair Type intra chrom %(L-I-O-R): 17% - 50% - 16% - 17% Pair Type inter chrom %(L-I-O-R): 27% - 22% - 24% - 27% DE: 32% Cis/all (FF and RR orient): 99.6% Inter-chromosomal: 548 (0.05% / 0.23%) Intra-chromosomal: 212,753 (19.02% / 88.27%) Short Range (<20,000bp): 143,948 (12.87% / 59.72%) Long Range (>20,000bp): 68,805 (6.15% / 28.55%)