Experiment description: Juicer version 1.5.6; BWA 0.7.18-r1243-dirty; 16 threads; openjdk version "22.0.1-internal" 2024-04-16; /home/nuriddinov/progs/juicer-master/CPU/juicer.sh -S final -t 16 -d /beegfs/scratch/ws/ws1/nuriddinov-scratch2/fastq/alOe -p /beegfs/scratch/ws/ws1/nuriddinov-scratch2/genome/alOe/alOe.fa.scf.sizes -y /beegfs/scratch/ws/ws1/nuriddinov-scratch2/genome/alOe/alOe.fa.DpnII.juicer.txt -n alOe -l 2500000,1000000,500000,250000,100000,50000,25000,10000 -z /beegfs/scratch/ws/ws1/nuriddinov-scratch2/genome/alOe/alOe.fa -o /beegfs/scratch/ws/ws1/nuriddinov-scratch2/hic/alOe -D /home/nuriddinov/progs/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                        
Sequenced Read Pairs:  62,921,613
 Normal Paired: 31,710,470 (50.40%)
 Chimeric Paired: 24,880,545 (39.54%)
 Chimeric Ambiguous: 6,172,814 (9.81%)
 Unmapped: 157,784 (0.25%)
 Ligation Motif Present: 49,949,758 (79.38%)
Alignable (Normal+Chimeric Paired): 56,591,015 (89.94%)
Unique Reads: 53,330,272 (84.76%)
PCR Duplicates: 831,558 (1.32%)
Optical Duplicates: 2,429,185 (3.86%)
Library Complexity Estimate: 1,745,759,501
Intra-fragment Reads: 5,453,774 (8.67% / 10.23%)
Below MAPQ Threshold: 3,399,487 (5.40% / 6.37%)
Hi-C Contacts: 49,930,785 (79.35% / 93.63%)
 Ligation Motif Present: 37,237,735  (59.18% / 69.82%)
 3' Bias (Long Range): 81% - 19%
 Pair Type intra chrom %(L-I-O-R): 8% - 77% - 8% - 8%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 54%
 Cis/all (FF and RR orient): 52.3%
Inter-chromosomal: 10,841,206  (17.23% / 20.33%)
Intra-chromosomal: 39,089,579  (62.12% / 73.30%)
Short Range (<20,000bp): 29,532,613  (46.94% / 55.38%)
Long Range (>20,000bp): 9,556,966  (15.19% / 17.92%)