Experiment description: Juicer version 1.5.6; BWA 0.7.18-r1243-dirty; 16 threads; openjdk version "22.0.1-internal" 2024-04-16; /home/nuriddinov/progs/juicer-master/CPU/juicer.sh -S final -t 16 -d /beegfs/scratch/ws/ws1/nuriddinov-scratch2/fastq/alOe -p /beegfs/scratch/ws/ws1/nuriddinov-scratch2/genome/alOe/alOe.fa.scf.sizes -y /beegfs/scratch/ws/ws1/nuriddinov-scratch2/genome/alOe/alOe.fa.DpnII.juicer.txt -n alOe -l 2500000,1000000,500000,250000,100000,50000,25000,10000 -z /beegfs/scratch/ws/ws1/nuriddinov-scratch2/genome/alOe/alOe.fa -o /beegfs/scratch/ws/ws1/nuriddinov-scratch2/hic/alOe -D /home/nuriddinov/progs/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                        
Sequenced Read Pairs:  62,921,613
 Normal Paired: 31,710,470 (50.40%)
 Chimeric Paired: 24,880,545 (39.54%)
 Chimeric Ambiguous: 6,172,814 (9.81%)
 Unmapped: 157,784 (0.25%)
 Ligation Motif Present: 49,949,758 (79.38%)
Alignable (Normal+Chimeric Paired): 56,591,015 (89.94%)
Unique Reads: 53,330,272 (84.76%)
PCR Duplicates: 831,558 (1.32%)
Optical Duplicates: 2,429,185 (3.86%)
Library Complexity Estimate: 1,745,759,501
Intra-fragment Reads: 5,453,774 (8.67% / 10.23%)
Below MAPQ Threshold: 5,712,534 (9.08% / 10.71%)
Hi-C Contacts: 47,617,738 (75.68% / 89.29%)
 Ligation Motif Present: 35,346,294  (56.18% / 66.28%)
 3' Bias (Long Range): 81% - 19%
 Pair Type intra chrom %(L-I-O-R): 7% - 78% - 7% - 7%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 56%
 Cis/all (FF and RR orient): 53.0%
Inter-chromosomal: 9,883,816  (15.71% / 18.53%)
Intra-chromosomal: 37,733,922  (59.97% / 70.76%)
Short Range (<20,000bp): 28,775,983  (45.73% / 53.96%)
Long Range (>20,000bp): 8,957,939  (14.24% / 16.80%)