Experiment description: Juicer version 1.5.6; BWA 0.7.18-r1243-dirty; 16 threads; openjdk version "22.0.1-internal" 2024-04-16; /home/nuriddinov/progs/juicer-master/CPU/juicer.sh -S final -t 16 -d /beegfs/scratch/ws/ws1/nuriddinov-scratch2/fastq/miAr -p /beegfs/scratch/ws/ws1/nuriddinov-scratch2/genome/miAr/miAr.fa.scf.sizes -y /beegfs/scratch/ws/ws1/nuriddinov-scratch2/genome/miAr/miAr.fa.DpnII.juicer.txt -n miAr -l 2500000,1000000,500000,250000,100000,50000,25000,10000 -z /beegfs/scratch/ws/ws1/nuriddinov-scratch2/genome/miAr/miAr.fa -o /beegfs/scratch/ws/ws1/nuriddinov-scratch2/hic/miAr -D /home/nuriddinov/progs/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                        
Sequenced Read Pairs:  76,098,171
 Normal Paired: 37,196,729 (48.88%)
 Chimeric Paired: 28,523,845 (37.48%)
 Chimeric Ambiguous: 10,105,564 (13.28%)
 Unmapped: 272,033 (0.36%)
 Ligation Motif Present: 64,249,769 (84.43%)
Alignable (Normal+Chimeric Paired): 65,720,574 (86.36%)
Unique Reads: 62,080,373 (81.58%)
PCR Duplicates: 915,509 (1.20%)
Optical Duplicates: 2,724,692 (3.58%)
Library Complexity Estimate: 2,146,313,376
Intra-fragment Reads: 5,385,511 (7.08% / 8.68%)
Below MAPQ Threshold: 6,020,518 (7.91% / 9.70%)
Hi-C Contacts: 56,059,855 (73.67% / 90.30%)
 Ligation Motif Present: 44,701,500  (58.74% / 72.01%)
 3' Bias (Long Range): 81% - 19%
 Pair Type intra chrom %(L-I-O-R): 7% - 80% - 6% - 7%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 55%
 Cis/all (FF and RR orient): 42.3%
Inter-chromosomal: 14,712,495  (19.33% / 23.70%)
Intra-chromosomal: 41,347,360  (54.33% / 66.60%)
Short Range (<20,000bp): 33,190,913  (43.62% / 53.46%)
Long Range (>20,000bp): 8,156,447  (10.72% / 13.14%)