Experiment description: Juicer version 1.5.6; BWA 0.7.18-r1243-dirty; 4 threads; openjdk version "22.0.1-internal" 2024-04-16; /home/nuriddinov/progs/juicer-master/CPU/juicer.sh -t 4 -d /home/nuriddinov/scratch/fastq/alOe/2 -p /home/nuriddinov/scratch/genome/alOe/alOe.fa.scf.sizes -y /home/nuriddinov/scratch/genome/alOe/alOe.fa.DpnII.juicer.txt -n alOe -l 2500000,1000000,500000,250000,100000,50000,25000,10000 -z /home/nuriddinov/scratch/genome/alOe/alOe.fa -o /home/nuriddinov/scratch/out/hic/alOe/2 -D /home/nuriddinov/progs/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  33,827
 Normal Paired: 15,760 (46.59%)
 Chimeric Paired: 14,701 (43.46%)
 Chimeric Ambiguous: 3,215 (9.50%)
 Unmapped: 151 (0.45%)
 Ligation Motif Present: 26,523 (78.41%)
Alignable (Normal+Chimeric Paired): 30,461 (90.05%)
Unique Reads: 30,423 (89.94%)
PCR Duplicates: 16 (0.05%)
Optical Duplicates: 22 (0.07%)
Library Complexity Estimate: 28,944,000
Intra-fragment Reads: 1,584 (4.68% / 5.21%)
Below MAPQ Threshold: 3,551 (10.50% / 11.67%)
Hi-C Contacts: 26,872 (79.44% / 88.33%)
 Ligation Motif Present: 16,762  (49.55% / 55.10%)
 3' Bias (Long Range): 73% - 27%
 Pair Type intra chrom %(L-I-O-R): 12% - 65% - 12% - 12%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 24% - 25%
 DE: 37%
 Cis/all (FF and RR orient): 53.1%
Inter-chromosomal: 7,964  (23.54% / 26.18%)
Intra-chromosomal: 18,908  (55.90% / 62.15%)
Short Range (<20,000bp): 11,486  (33.96% / 37.75%)
Long Range (>20,000bp): 7,422  (21.94% / 24.40%)