Experiment description: Juicer version 1.5.6; BWA 0.7.18-r1243-dirty; 4 threads; openjdk version "22.0.1-internal" 2024-04-16; /home/nuriddinov/progs/juicer-master/CPU/juicer.sh -t 4 -d /home/nuriddinov/scratch/fastq/alOe/3 -p /home/nuriddinov/scratch/genome/alOe/alOe.fa.scf.sizes -y /home/nuriddinov/scratch/genome/alOe/alOe.fa.DpnII.juicer.txt -n alOe -l 2500000,1000000,500000,250000,100000,50000,25000,10000 -z /home/nuriddinov/scratch/genome/alOe/alOe.fa -o /home/nuriddinov/scratch/out/hic/alOe/3 -D /home/nuriddinov/progs/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  55,403
 Normal Paired: 23,763 (42.89%)
 Chimeric Paired: 26,690 (48.17%)
 Chimeric Ambiguous: 4,771 (8.61%)
 Unmapped: 179 (0.32%)
 Ligation Motif Present: 50,018 (90.28%)
Alignable (Normal+Chimeric Paired): 50,453 (91.07%)
Unique Reads: 50,431 (91.03%)
PCR Duplicates: 8 (0.01%)
Optical Duplicates: 14 (0.03%)
Library Complexity Estimate: 158,988,981
Intra-fragment Reads: 1,725 (3.11% / 3.42%)
Below MAPQ Threshold: 5,713 (10.31% / 11.33%)
Hi-C Contacts: 44,718 (80.71% / 88.67%)
 Ligation Motif Present: 35,376  (63.85% / 70.15%)
 3' Bias (Long Range): 83% - 17%
 Pair Type intra chrom %(L-I-O-R): 10% - 70% - 10% - 10%
 Pair Type inter chrom %(L-I-O-R): 26% - 25% - 25% - 25%
 DE: 46%
 Cis/all (FF and RR orient): 55.6%
Inter-chromosomal: 10,746  (19.40% / 21.31%)
Intra-chromosomal: 33,972  (61.32% / 67.36%)
Short Range (<20,000bp): 22,873  (41.28% / 45.36%)
Long Range (>20,000bp): 11,099  (20.03% / 22.01%)