Experiment description: Juicer version 1.5.6; BWA 0.7.18-r1243-dirty; 4 threads; openjdk version "22.0.1-internal" 2024-04-16; /home/nuriddinov/progs/juicer-master/CPU/juicer.sh -t 4 -d /home/nuriddinov/scratch/fastq/miAr/2 -p /home/nuriddinov/scratch/genome/miAr/miAr.fa.scf.sizes -y /home/nuriddinov/scratch/genome/miAr/miAr.fa.DpnII.juicer.txt -n miAr -l 2500000,1000000,500000,250000,100000,50000,25000,10000 -z /home/nuriddinov/scratch/genome/miAr/miAr.fa -o /home/nuriddinov/scratch/out/hic/miAr/2 -D /home/nuriddinov/progs/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  43,110
 Normal Paired: 17,946 (41.63%)
 Chimeric Paired: 18,977 (44.02%)
 Chimeric Ambiguous: 6,027 (13.98%)
 Unmapped: 160 (0.37%)
 Ligation Motif Present: 38,144 (88.48%)
Alignable (Normal+Chimeric Paired): 36,923 (85.65%)
Unique Reads: 36,909 (85.62%)
PCR Duplicates: 4 (0.01%)
Optical Duplicates: 10 (0.02%)
Library Complexity Estimate: 170,308,891
Intra-fragment Reads: 1,786 (4.14% / 4.84%)
Below MAPQ Threshold: 5,925 (13.74% / 16.05%)
Hi-C Contacts: 30,984 (71.87% / 83.95%)
 Ligation Motif Present: 24,248  (56.25% / 65.70%)
 3' Bias (Long Range): 82% - 18%
 Pair Type intra chrom %(L-I-O-R): 8% - 76% - 8% - 8%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 46%
 Cis/all (FF and RR orient): 40.1%
Inter-chromosomal: 10,096  (23.42% / 27.35%)
Intra-chromosomal: 20,888  (48.45% / 56.59%)
Short Range (<20,000bp): 15,576  (36.13% / 42.20%)
Long Range (>20,000bp): 5,312  (12.32% / 14.39%)