Experiment description: Juicer version 1.5.6; BWA 0.7.18-r1243-dirty; 4 threads; openjdk version "22.0.1-internal" 2024-04-16; /home/nuriddinov/progs/juicer-master/CPU/juicer.sh -t 4 -d /home/nuriddinov/scratch/fastq/miAr/3 -p /home/nuriddinov/scratch/genome/miAr/miAr.fa.scf.sizes -y /home/nuriddinov/scratch/genome/miAr/miAr.fa.DpnII.juicer.txt -n miAr -l 2500000,1000000,500000,250000,100000,50000,25000,10000 -z /home/nuriddinov/scratch/genome/miAr/miAr.fa -o /home/nuriddinov/scratch/out/hic/miAr/3 -D /home/nuriddinov/progs/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  49,300
 Normal Paired: 22,402 (45.44%)
 Chimeric Paired: 20,721 (42.03%)
 Chimeric Ambiguous: 5,981 (12.13%)
 Unmapped: 196 (0.40%)
 Ligation Motif Present: 44,230 (89.72%)
Alignable (Normal+Chimeric Paired): 43,123 (87.47%)
Unique Reads: 43,099 (87.42%)
PCR Duplicates: 8 (0.02%)
Optical Duplicates: 16 (0.03%)
Library Complexity Estimate: 116,123,971
Intra-fragment Reads: 2,147 (4.35% / 4.98%)
Below MAPQ Threshold: 6,705 (13.60% / 15.56%)
Hi-C Contacts: 36,394 (73.82% / 84.44%)
 Ligation Motif Present: 30,089  (61.03% / 69.81%)
 3' Bias (Long Range): 83% - 17%
 Pair Type intra chrom %(L-I-O-R): 7% - 79% - 7% - 7%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 52%
 Cis/all (FF and RR orient): 43.3%
Inter-chromosomal: 9,885  (20.05% / 22.94%)
Intra-chromosomal: 26,509  (53.77% / 61.51%)
Short Range (<20,000bp): 20,604  (41.79% / 47.81%)
Long Range (>20,000bp): 5,905  (11.98% / 13.70%)