Experiment description: Juicer version 1.5.6; BWA 0.7.18-r1243-dirty; 24 threads; openjdk version "22.0.1-internal" 2024-04-16; /home/nuriddinov/progs/juicer-master/CPU/juicer.sh -t 24 -d /home/nuriddinov/scratch/fastq/alOe -p /home/nuriddinov/scratch/genome//alOe/alOe.r10a.agp.chr.sizes -q 30 -s none -n alOe.r10a -l 2500000,1000000,500000,250000,100000,50000,25000,10000,5000 -z /home/nuriddinov/scratch/genome//alOe/alOe.r10a.fa -o /home/nuriddinov/scratch/out/hic/alOe.r10a -D /home/nuriddinov/progs/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  63,010,843
 Normal Paired: 31,836,440 (50.53%)
 Chimeric Paired: 24,924,044 (39.56%)
 Chimeric Ambiguous: 5,440,146 (8.63%)
 Unmapped: 810,213 (1.29%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 56,760,484 (90.08%)
Unique Reads: 53,622,281 (85.10%)
PCR Duplicates: 760,177 (1.21%)
Optical Duplicates: 2,378,026 (3.77%)
Library Complexity Estimate: 1,927,068,861
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 5,800,243 (9.21% / 10.82%)
Hi-C Contacts: 47,822,038 (75.89% / 89.18%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 8% - 75% - 8% - 8%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 56%
 Cis/all (FF and RR orient): 64.3%
Inter-chromosomal: 7,568,318  (12.01% / 14.11%)
Intra-chromosomal: 40,253,720  (63.88% / 75.07%)
Short Range (<20,000bp): 28,829,611  (45.75% / 53.76%)
Long Range (>20,000bp): 11,424,109  (18.13% / 21.30%)