Experiment description: Juicer version 1.5.6; BWA 0.7.18-r1243-dirty; 24 threads; openjdk version "22.0.1-internal" 2024-04-16; /home/nuriddinov/progs/juicer-master/CPU/juicer.sh -t 24 -d /home/nuriddinov/scratch/fastq/miAr -p /home/nuriddinov/scratch/genome//miAr/miAr.r10a.agp.chr.sizes -q 30 -s none -n miAr.r10a -l 2500000,1000000,500000,250000,100000,50000,25000,10000,5000 -z /home/nuriddinov/scratch/genome//miAr/miAr.r10a.fa -o /home/nuriddinov/scratch/out/hic/miAr.r10a -D /home/nuriddinov/progs/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  76,190,581
 Normal Paired: 37,373,395 (49.05%)
 Chimeric Paired: 28,890,412 (37.92%)
 Chimeric Ambiguous: 9,589,057 (12.59%)
 Unmapped: 337,717 (0.44%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 66,263,807 (86.97%)
Unique Reads: 62,430,875 (81.94%)
PCR Duplicates: 1,009,570 (1.33%)
Optical Duplicates: 2,823,362 (3.71%)
Library Complexity Estimate: 1,972,066,058
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 5,840,503 (7.67% / 9.36%)
Hi-C Contacts: 56,590,372 (74.27% / 90.64%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 8% - 75% - 8% - 8%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 54%
 Cis/all (FF and RR orient): 57.7%
Inter-chromosomal: 10,973,191  (14.40% / 17.58%)
Intra-chromosomal: 45,617,181  (59.87% / 73.07%)
Short Range (<20,000bp): 33,322,199  (43.74% / 53.37%)
Long Range (>20,000bp): 12,294,982  (16.14% / 19.69%)