Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -q 30 -n AatrEE.sub -d /mnt/storage/home/manuriddinov/scratch/fastq/Ano/AatrE3 -p /mnt/storage/home/manuriddinov/MyData/Anopheles/genome/chr/AatrEE/AatrEE.sub.chrom.sizes -y /mnt/storage/home/manuriddinov/MyData/Anopheles/genome/chr/AatrEE/AatrEE.sub.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Anopheles/genome/chr/AatrEE/AatrEE.sub.fa -o /mnt/storage/home/manuriddinov/scratch/Invertebrates/Anopheles/AatrEE.sub -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                               
Sequenced Read Pairs:  217,895,615
 Normal Paired: 110,569,307 (50.74%)
 Chimeric Paired: 70,950,313 (32.56%)
 Chimeric Ambiguous: 18,710,103 (8.59%)
 Unmapped: 17,665,892 (8.11%)
 Ligation Motif Present: 142,902,260 (65.58%)
Alignable (Normal+Chimeric Paired): 181,519,620 (83.31%)
Unique Reads: 157,151,511 (72.12%)
PCR Duplicates: 22,212,424 (10.19%)
Optical Duplicates: 2,155,685 (0.99%)
Library Complexity Estimate: 663,065,363
Intra-fragment Reads: 1,387,166 (0.64% / 0.88%)
Below MAPQ Threshold: 23,228,507 (10.66% / 14.78%)
Hi-C Contacts: 132,535,838 (60.83% / 84.34%)
 Ligation Motif Present: 62,149,504  (28.52% / 39.55%)
 3' Bias (Long Range): 66% - 34%
 Pair Type intra chrom %(L-I-O-R): 22% - 34% - 22% - 22%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 11%
 Cis/all (FF and RR orient): 85.3%
Inter-chromosomal: 17,314,479  (7.95% / 11.02%)
Intra-chromosomal: 115,221,359  (52.88% / 73.32%)
Short Range (<20,000bp): 32,076,535  (14.72% / 20.41%)
Long Range (>20,000bp): 83,144,824  (38.16% / 52.91%)