Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -q 30 -n AatrEE.sub -d /mnt/storage/home/manuriddinov/scratch/fastq/Ano/AatrE3 -p /mnt/storage/home/manuriddinov/MyData/Anopheles/genome/chr/AatrEE/AatrEE.sub.chrom.sizes -y /mnt/storage/home/manuriddinov/MyData/Anopheles/genome/chr/AatrEE/AatrEE.sub.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Anopheles/genome/chr/AatrEE/AatrEE.sub.fa -o /mnt/storage/home/manuriddinov/scratch/Invertebrates/Anopheles/AatrEE.sub -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                               
Sequenced Read Pairs:  217,895,615
 Normal Paired: 110,569,307 (50.74%)
 Chimeric Paired: 70,950,313 (32.56%)
 Chimeric Ambiguous: 18,710,103 (8.59%)
 Unmapped: 17,665,892 (8.11%)
 Ligation Motif Present: 142,902,260 (65.58%)
Alignable (Normal+Chimeric Paired): 181,519,620 (83.31%)
Unique Reads: 157,151,511 (72.12%)
PCR Duplicates: 22,212,424 (10.19%)
Optical Duplicates: 2,155,685 (0.99%)
Library Complexity Estimate: 663,065,363
Intra-fragment Reads: 1,387,166 (0.64% / 0.88%)
Below MAPQ Threshold: 28,572,725 (13.11% / 18.18%)
Hi-C Contacts: 127,191,620 (58.37% / 80.94%)
 Ligation Motif Present: 59,874,778  (27.48% / 38.10%)
 3' Bias (Long Range): 66% - 34%
 Pair Type intra chrom %(L-I-O-R): 22% - 34% - 22% - 22%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 11%
 Cis/all (FF and RR orient): 86.2%
Inter-chromosomal: 15,538,198  (7.13% / 9.89%)
Intra-chromosomal: 111,653,422  (51.24% / 71.05%)
Short Range (<20,000bp): 31,318,860  (14.37% / 19.93%)
Long Range (>20,000bp): 80,334,562  (36.87% / 51.12%)