Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -q 30 -n Afree.8 -d /mnt/storage/home/manuriddinov/scratch/fastq/Ano/Afree -p /mnt/storage/home/manuriddinov/MyData/Anopheles/genome/chr/Afree.8/Afree.8.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Anopheles/genome/chr/Afree.8/Afree.8.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Anopheles/genome/chr/Afree.8/Afree.8.fa -o /mnt/storage/home/manuriddinov/scratch/Invertebrates/Afree.8 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU Sequenced Read Pairs: 150,329,898 Normal Paired: 99,221,216 (66.00%) Chimeric Paired: 35,876,894 (23.87%) Chimeric Ambiguous: 11,747,494 (7.81%) Unmapped: 3,484,294 (2.32%) Ligation Motif Present: 72,971,411 (48.54%) Alignable (Normal+Chimeric Paired): 135,098,110 (89.87%) Unique Reads: 109,917,797 (73.12%) PCR Duplicates: 23,907,532 (15.90%) Optical Duplicates: 1,272,781 (0.85%) Library Complexity Estimate: 328,471,237 Intra-fragment Reads: 3,657,023 (2.43% / 3.33%) Below MAPQ Threshold: 18,270,644 (12.15% / 16.62%) Hi-C Contacts: 87,990,130 (58.53% / 80.05%) Ligation Motif Present: 32,485,953 (21.61% / 29.55%) 3' Bias (Long Range): 64% - 36% Pair Type %(L-I-O-R): 25% - 25% - 25% - 25% Inter-chromosomal: 9,831,393 (6.54% / 8.94%) Intra-chromosomal: 78,158,737 (51.99% / 71.11%) Short Range (<20Kb): 40,453,528 (26.91% / 36.80%) Long Range (>20Kb): 37,704,967 (25.08% / 34.30%)