Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -q 30 -n Afree.8 -d /mnt/storage/home/manuriddinov/scratch/fastq/Ano/Afree -p /mnt/storage/home/manuriddinov/MyData/Anopheles/genome/chr/Afree.8/Afree.8.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Anopheles/genome/chr/Afree.8/Afree.8.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Anopheles/genome/chr/Afree.8/Afree.8.fa -o /mnt/storage/home/manuriddinov/scratch/Invertebrates/Afree.8 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU Sequenced Read Pairs: 150,329,898 Normal Paired: 99,221,216 (66.00%) Chimeric Paired: 35,876,894 (23.87%) Chimeric Ambiguous: 11,747,494 (7.81%) Unmapped: 3,484,294 (2.32%) Ligation Motif Present: 72,971,411 (48.54%) Alignable (Normal+Chimeric Paired): 135,098,110 (89.87%) Unique Reads: 109,917,797 (73.12%) PCR Duplicates: 23,907,532 (15.90%) Optical Duplicates: 1,272,781 (0.85%) Library Complexity Estimate: 328,471,237 Intra-fragment Reads: 3,657,023 (2.43% / 3.33%) Below MAPQ Threshold: 23,570,290 (15.68% / 21.44%) Hi-C Contacts: 82,690,484 (55.01% / 75.23%) Ligation Motif Present: 30,786,846 (20.48% / 28.01%) 3' Bias (Long Range): 64% - 36% Pair Type %(L-I-O-R): 25% - 25% - 25% - 25% Inter-chromosomal: 8,076,163 (5.37% / 7.35%) Intra-chromosomal: 74,614,321 (49.63% / 67.88%) Short Range (<20Kb): 39,251,094 (26.11% / 35.71%) Long Range (>20Kb): 35,363,000 (23.52% / 32.17%)