Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -q 30 -n AfreeHC.sub -d /mnt/storage/home/manuriddinov/scratch/fastq/Ano/Afree -p /mnt/storage/home/manuriddinov/MyData/Anopheles/genome/chr/AfreeHC/AfreeHC.sub.chrom.sizes -y /mnt/storage/home/manuriddinov/MyData/Anopheles/genome/chr/AfreeHC/AfreeHC.sub.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Anopheles/genome/chr/AfreeHC/AfreeHC.sub.fa -o /mnt/storage/home/manuriddinov/scratch/Invertebrates/Anopheles/AfreeHC.sub -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                        
Sequenced Read Pairs:  150,329,898
 Normal Paired: 89,732,923 (59.69%)
 Chimeric Paired: 40,060,194 (26.65%)
 Chimeric Ambiguous: 7,248,697 (4.82%)
 Unmapped: 13,288,084 (8.84%)
 Ligation Motif Present: 72,971,411 (48.54%)
Alignable (Normal+Chimeric Paired): 129,793,117 (86.34%)
Unique Reads: 102,978,641 (68.50%)
PCR Duplicates: 25,546,518 (16.99%)
Optical Duplicates: 1,267,958 (0.84%)
Library Complexity Estimate: 278,871,788
Intra-fragment Reads: 3,343,708 (2.22% / 3.25%)
Below MAPQ Threshold: 11,030,958 (7.34% / 10.71%)
Hi-C Contacts: 88,603,975 (58.94% / 86.04%)
 Ligation Motif Present: 31,870,420  (21.20% / 30.95%)
 3' Bias (Long Range): 65% - 35%
 Pair Type intra chrom %(L-I-O-R): 18% - 48% - 17% - 18%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 27%
 Cis/all (FF and RR orient): 85.3%
Inter-chromosomal: 9,586,257  (6.38% / 9.31%)
Intra-chromosomal: 79,017,718  (52.56% / 76.73%)
Short Range (<20,000bp): 40,464,257  (26.92% / 39.29%)
Long Range (>20,000bp): 38,553,461  (25.65% / 37.44%)