Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -q 30 -n AfreeHC.sub -d /mnt/storage/home/manuriddinov/scratch/fastq/Ano/Afree -p /mnt/storage/home/manuriddinov/MyData/Anopheles/genome/chr/AfreeHC/AfreeHC.sub.chrom.sizes -y /mnt/storage/home/manuriddinov/MyData/Anopheles/genome/chr/AfreeHC/AfreeHC.sub.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Anopheles/genome/chr/AfreeHC/AfreeHC.sub.fa -o /mnt/storage/home/manuriddinov/scratch/Invertebrates/Anopheles/AfreeHC.sub -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                        
Sequenced Read Pairs:  150,329,898
 Normal Paired: 89,732,923 (59.69%)
 Chimeric Paired: 40,060,194 (26.65%)
 Chimeric Ambiguous: 7,248,697 (4.82%)
 Unmapped: 13,288,084 (8.84%)
 Ligation Motif Present: 72,971,411 (48.54%)
Alignable (Normal+Chimeric Paired): 129,793,117 (86.34%)
Unique Reads: 102,978,641 (68.50%)
PCR Duplicates: 25,546,518 (16.99%)
Optical Duplicates: 1,267,958 (0.84%)
Library Complexity Estimate: 278,871,788
Intra-fragment Reads: 3,343,708 (2.22% / 3.25%)
Below MAPQ Threshold: 14,172,943 (9.43% / 13.76%)
Hi-C Contacts: 85,461,990 (56.85% / 82.99%)
 Ligation Motif Present: 30,820,157  (20.50% / 29.93%)
 3' Bias (Long Range): 65% - 35%
 Pair Type intra chrom %(L-I-O-R): 17% - 48% - 17% - 18%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 27%
 Cis/all (FF and RR orient): 86.2%
Inter-chromosomal: 8,587,989  (5.71% / 8.34%)
Intra-chromosomal: 76,874,001  (51.14% / 74.65%)
Short Range (<20,000bp): 39,624,990  (26.36% / 38.48%)
Long Range (>20,000bp): 37,249,011  (24.78% / 36.17%)