Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.13" 2021-10-19; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/juicer -g Parus_major1.1 -z /Data/DataBases/Parus_major_1.1/Parus_major1.1/Parus_major1.1.fasta -p /Data/DataBases/Parus_major_1.1/Parus_major1.1/Parus_major1.1.chromsizes.txt -s DpnII -y /Data/DataBases/Parus_major_1.1/Parus_major1.1/Parus_major1.1.rsites.DpnII.txt -d /Data/NGS_Data/20220102-Vasilev_Test_Run/Results/tit_ParusMajor                                                                                                                                                                                                                                                                                                                                                                                                                                           
Sequenced Read Pairs:  62,673
 Normal Paired: 50,721 (80.93%)
 Chimeric Paired: 5,626 (8.98%)
 Chimeric Ambiguous: 287 (0.46%)
 Unmapped: 6,039 (9.64%)
 Ligation Motif Present: 32,795 (52.33%)
Alignable (Normal+Chimeric Paired): 56,347 (89.91%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2022-01-14T21:53:10,161]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 53,940 (86.07%)
PCR Duplicates: 2,394 (3.82%)
Optical Duplicates: 13 (0.02%)
Library Complexity Estimate: 643,892
Intra-fragment Reads: 20,567 (32.82% / 38.13%)
Below MAPQ Threshold: 3,963 (6.32% / 7.35%)
Hi-C Contacts: 29,410 (46.93% / 54.52%)
 Ligation Motif Present: 24,372  (38.89% / 45.18%)
 3' Bias (Long Range): 86% - 14%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 3,143  (5.01% / 5.83%)
Intra-chromosomal: 26,267  (41.91% / 48.70%)
Short Range (<20Kb): 16,235  (25.90% / 30.10%)
Long Range (>20Kb): 10,032  (16.01% / 18.60%)