Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10} threads; openjdk version "11.0.11" 2021-04-20; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/juicer/scripts/juicer.sh -t 10} -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/juicer -g flye_noLPH_q9_pilon -z /Data/DataBases/flye_noLPH_q9_pilon_Mushroom_Mosquito/flye_noLPH_q9_pilon.fasta -p /Data/DataBases/flye_noLPH_q9_pilon_Mushroom_Mosquito/flye_noLPH_q9_pilon.chrom.sizes -s DpnII -y /Data/DataBases/flye_noLPH_q9_pilon_Mushroom_Mosquito/flye_noLPH_q9_pilon_DpnII_RestrictionSites.txt -d /Data/NGS_Data/20211108_VarLuk_StrangeCreature/MushroomMosquito                                                                                                                                                                                                                                                                                                                                                                                         
Sequenced Read Pairs:  392,310
 Normal Paired: 345,823 (88.15%)
 Chimeric Paired: 19,331 (4.93%)
 Chimeric Ambiguous: 8,276 (2.11%)
 Unmapped: 18,880 (4.81%)
 Ligation Motif Present: 66,517 (16.96%)
Alignable (Normal+Chimeric Paired): 365,154 (93.08%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2021-11-08T14:29:06,313]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 364,899 (93.01%)
PCR Duplicates: 110 (0.03%)
Optical Duplicates: 145 (0.04%)
Library Complexity Estimate: 605,476,369
Intra-fragment Reads: 114,966 (29.30% / 31.51%)
Below MAPQ Threshold: 100,558 (25.63% / 27.56%)
Hi-C Contacts: 149,375 (38.08% / 40.94%)
 Ligation Motif Present: 41,045  (10.46% / 11.25%)
 3' Bias (Long Range): 74% - 26%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 53,204  (13.56% / 14.58%)
Intra-chromosomal: 96,171  (24.51% / 26.36%)
Short Range (<20Kb): 58,571  (14.93% / 16.05%)
Long Range (>20Kb): 37,600  (9.58% / 10.30%)