Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.11" 2021-04-20; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/juicer -g X-contigs_Gerbi_commaless -z /Data/DataBases/flye_noLPH_q9_pilon_Mushroom_Mosquito/X_assemblies/X-contigs_Gerbi_commaless.fasta -p /Data/DataBases/flye_noLPH_q9_pilon_Mushroom_Mosquito/X_assemblies/X-contigs_Gerbi_commaless.chrom.sizes -s DpnII -y /Data/DataBases/flye_noLPH_q9_pilon_Mushroom_Mosquito/X_assemblies/X-contigs_Gerbi_commaless_DpnII_RS.txt -d /Data/NGS_Data/20211108_VarLuk_StrangeCreature/MushMosq_on_X-contigs_Gerbi_commaless                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  392,310
 Normal Paired: 127,416 (32.48%)
 Chimeric Paired: 3,606 (0.92%)
 Chimeric Ambiguous: 2,912 (0.74%)
 Unmapped: 258,376 (65.86%)
 Ligation Motif Present: 66,517 (16.96%)
Alignable (Normal+Chimeric Paired): 131,022 (33.40%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2021-11-09T15:07:46,761]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 130,618 (33.29%)
PCR Duplicates: 357 (0.09%)
Optical Duplicates: 47 (0.01%)
Library Complexity Estimate: 23,982,163
Intra-fragment Reads: 33,192 (8.46% / 25.41%)
Below MAPQ Threshold: 57,138 (14.56% / 43.74%)
Hi-C Contacts: 40,288 (10.27% / 30.84%)
 Ligation Motif Present: 11,032  (2.81% / 8.45%)
 3' Bias (Long Range): 69% - 31%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 14,802  (3.77% / 11.33%)
Intra-chromosomal: 25,486  (6.50% / 19.51%)
Short Range (<20Kb): 16,674  (4.25% / 12.77%)
Long Range (>20Kb): 8,812  (2.25% / 6.75%)