Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.11" 2021-04-20; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/juicer -g merged_Prim_on_Gerbi_soft_commaless -z /Data/DataBases/flye_noLPH_q9_pilon_Mushroom_Mosquito/X_assemblies/merged_Prim_on_Gerbi_soft_commaless.fasta -p /Data/DataBases/flye_noLPH_q9_pilon_Mushroom_Mosquito/X_assemblies/merged_Prim_on_Gerbi_soft_commaless.chrom.sizes -s DpnII -y /Data/DataBases/flye_noLPH_q9_pilon_Mushroom_Mosquito/X_assemblies/merged_Prim_on_Gerbi_soft_commaless_DpnII_RS.txt -d /Data/NGS_Data/20211108_VarLuk_StrangeCreature/MushMosq_on_merged_Prim_on_Gerbi_soft_commaless                                                                                                                                                                                                                                                                   
Sequenced Read Pairs:  392,310
 Normal Paired: 119,258 (30.40%)
 Chimeric Paired: 3,258 (0.83%)
 Chimeric Ambiguous: 2,718 (0.69%)
 Unmapped: 267,076 (68.08%)
 Ligation Motif Present: 66,517 (16.96%)
Alignable (Normal+Chimeric Paired): 122,516 (31.23%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2021-11-09T15:04:51,936]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 121,981 (31.09%)
PCR Duplicates: 491 (0.13%)
Optical Duplicates: 44 (0.01%)
Library Complexity Estimate: 15,233,477
Intra-fragment Reads: 30,572 (7.79% / 25.06%)
Below MAPQ Threshold: 55,403 (14.12% / 45.42%)
Hi-C Contacts: 36,006 (9.18% / 29.52%)
 Ligation Motif Present: 9,771  (2.49% / 8.01%)
 3' Bias (Long Range): 67% - 33%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 10,700  (2.73% / 8.77%)
Intra-chromosomal: 25,306  (6.45% / 20.75%)
Short Range (<20Kb): 15,289  (3.90% / 12.53%)
Long Range (>20Kb): 10,016  (2.55% / 8.21%)