Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.18" 2023-01-17; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g mm10 -d /storage2/nyt/Projects/Juicer-Out/2023-02-28-BGI-dMcph_PICO_TomilinStarkovaRNA-seqHi-C/B2-15r2 -s DpnII -y /storage2/dreamworld/Databases/mm10_canonical/juicer.rs/mm10_canonical.rs.DpnII.txt -p /storage2/dreamworld/Databases/mm10_canonical/mm10_canonical.chrom.sizes -z /storage2/dreamworld/Databases/mm10_canonical/mm10_canonical.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10                                                                                                                                                                                                                                                                                                                                                                                                                                           
Sequenced Read Pairs:  131,760,678
 Normal Paired: 56,178,330 (42.64%)
 Chimeric Paired: 55,738,536 (42.30%)
 Chimeric Ambiguous: 16,062,068 (12.19%)
 Unmapped: 3,781,744 (2.87%)
 Ligation Motif Present: 113,985,587 (86.51%)
Alignable (Normal+Chimeric Paired): 111,916,866 (84.94%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-03-02T04:32:23,471]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 108,123,030 (82.06%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 3,793,836 (2.88%)
Library Complexity Estimate: 0
Intra-fragment Reads: 15,032,267 (11.41% / 13.90%)
Below MAPQ Threshold: 12,659,263 (9.61% / 11.71%)
Hi-C Contacts: 80,431,500 (61.04% / 74.39%)
 Ligation Motif Present: 71,240,189  (54.07% / 65.89%)
 3' Bias (Long Range): 69% - 31%
 Pair Type intra chrom %(L-I-O-R): 15% - 54% - 15% - 15%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 22%
 Cis/all (FF and RR orient): 44.0%
Inter-chromosomal: 35,276,599  (26.77% / 32.63%)
Intra-chromosomal: 45,154,901  (34.27% / 41.76%)
Short Range (<20,000bp): 19,414,324  (14.73% / 17.96%)
Long Range (>20,000bp): 25,740,577  (19.54% / 23.81%)